Main / Tools / Cog database

Cog database

Cog database

Name: Cog database

File size: 549mb

Language: English

Rating: 6/10



The COG database is accompanied by the COGNITOR program that is used to fit new proteins into the COGs and can be applied to functional and phylogenetic  INTRODUCTION - CONSTRUCTION OF THE - STATISTICS OF THE COG. The COG protein database was generated by comparing predicted and known proteins in all completely sequenced microbial genomes to infer sets of orthologs . The COG database: an updated version includes eukaryotes. Roman L Tatusov Email author,; Natalie D Fedorova,; John D Jackson,; Aviva R Jacobs,; Boris.

Provides clusters of orthologous groups (COGs) and updated annotation of those COGs. COGs is a database where organisms are sorted according to the NCBI. get cog database from here and align it with your sequences by local blast program and find best hits based on identity, bit score or coverage yourself. Hits will. 20 Jul The COG database contains clusters from both Unicellular and Eukaryotic Organisms. There are currently 66 Unicellular organisms and a list.

I want to determine COG ( of each protein. Run BLASTp of my query sequences against COG database ( available at ;. The database of Clusters of Orthologous Groups of proteins (COGs) is an attempt on phylogenetic classification of the proteins encoded in complete genomes. Search for Cluster of Orthologous Groups (COG), pairwise orthology predictions, functional annotation and phylogenetic data for more than species. The Clusters of Orthologous Groups (COG) database seems like a good resource for associating function with a gene. It is still widely used by. Description, COG contains phylogenetic classification of proteins encoded in complete coverage and improved protein family annotation in the COG database.

The eggNOG database is a database of biological information hosted by the EMBL. It is based on the original idea of COGs (clusters of orthologous groups) and. Information about the open-access article 'The COG database: an updated version includes eukaryotes' in DOAJ. DOAJ is an online directory that indexes and. 25 Oct This article describes how to setup COGs on your system, and how to annotate your gene calls in an anvi'o contigs database with COGs. 3 Jun You could ask some one else to try it. If you own computer and the ftp server are within the same local network, you might be able to connect it.


В© 2018 - all rights reserved!